Sequence
atgc intronic sequence ATGC exonic sequence...caatgtaaacaacaagcagctaatgtagaccataaacttctctgttttctggattattcatagtttctgtttgagtgattcatttcttgcctcattgtagAATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATCACAGAGATCATGAAGCTCCTCT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G31760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86076252|gb|DR372009.1|DR372009EST: GTTCCGCTCTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAG AATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATT
genomic: GTTCCGCTCTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGgtttgtttga ... ctcattgtagAATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctggattattcatagtttctgtttgagtgattcatttcttgcctcattgtagAATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATCACAGAGATCATGAAGCTCCTCT
ttcatttcttgcctc CT-rich tract
attattcatagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caatgtaaacaacaagcagctaatgtagaccataaacttctctgttttctggattattcatagtttctgtttgagtgattcatttcttgcctcattgtagAATCCGGCGAACAAGAAGGAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATCACAGAGATCATGAAGCTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - aaacaac
- - - - - - - - - - - - - - - cataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga