1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaagttttatttcttttccctacccaaaatgttcttcttgtttgcatgcatagcgatgattccggaaatgtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCAGCTACCACGAGCTGCGAAGCGAGCTTGCTCGCATGTTTGGCCTCGAAG
species | Arabidopsis thaliana |
transcript | AT1G30330.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAG GTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCEST: gi|47829440|gb|CK119124.1|CK119124
genomic: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGgtaaagtttt ... gtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGC
EST: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAG GTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCEST: gi|47829830|gb|CK119514.1|CK119514
genomic: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGgtaaagtttt ... gtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGC
EST: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAG GTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGC
genomic: CCTCAGAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGgtaaagtttt ... gtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGC
caaaatgttcttcttgtttgcatgcatagcgatgattccggaaatgtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCAGCTACCACGAGCTGCGAAGCGAGCTTGCTCGCATGTTTGGCCTCGAAG
tgttttt CT-rich tract
aaatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagttttatttcttttccctacccaaaatgttcttcttgtttgcatgcatagcgatgattccggaaatgtttttgtagGTGTACAAGTCAGGGTCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCAGCTACCACGAGCTGCGAAGCGAGCTTGCTCGCATGTTTGGCCTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT