1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttttaagattttctgtgtggagcttgatcagatccatcttatagctgactttgcttgtagagtagttttcattgcaagagttttttgtggttttggcagGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATGGCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGAGAACAAGTCCTTCGT
species | Arabidopsis thaliana |
transcript | AT1G30300.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTTCCCAGTCTCTTTCAATCCCGCCTGAGAAAAATCCTAATTACAG GGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATGGCAAACATAAEST: gi|86072070|gb|DR367827.1|DR367827
genomic: GTTTGTTCCCAGTCTCTTTCAATCCCGCCTGAGAAAAATCCTAATTACAGgtacattctc ... gttttggcagGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATGGCAAACATAA
EST: GTTTGTTCCCAGTCTCTTTCAATCCCGCCTGAGAAAAATCCTAATTACAG GGGGAAATACTTCCCTGCTCATTGATTATTGCCAAAGTGAT
genomic: GTTTGTTCCCAGTCTCTTTCAATCCCGCCTGAGAAAAATCCTAATTACAGgtacattctc ... gttttggcagGGGGAA-TACTTCACTGCTCATTGATTATTGCCAAAGTGAT
ctgactttgcttgtagagtagttttcattgcaagagttttttgtggttttggcagGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATGGCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGAGAACAAGTCCTTCGT
agctgac putative branch site (score: 3)
ttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaagattttctgtgtggagcttgatcagatccatcttatagctgactttgcttgtagagtagttttcattgcaagagttttttgtggttttggcagGGGGAATACTTCACTGCTCATTGATTATTGCCAAAGTGATGGCAAACATAAATACATTCAAATCGATGTTGGCAAGACTTTCAGAGAACAAGTCCTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA