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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgagttctgtgactgaaattattataaacttatctcttggattgaggttaaaaaggactacttttgatttttaattagcatgaatcttcttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCAT

Basic information

species Arabidopsis thaliana
transcript AT1G30070.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125219668|gb|EL233753.1|EL233753
EST:     TCAATTCCGAGATTTCAAACTTGGAGAAG                         CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
genomic: TCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: gi|86054530|gb|DR350287.1|DR350287
EST:     GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG                         CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
EST: gi|152034020|gb|AU239749.2|AU239749
EST:     GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAG                         CTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA
genomic: GACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAAACTTGGAGAAGgtaccaaatc ... cttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggttaaaaaggactacttttgatttttaattagcatgaatcttcttgctgtagCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAACCAAAGGTACCAGTTACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCAT
                         ttttaat  putative branch site (score: 3)
                                         tcttcttgct  putative PPT
             actacttttgattttt  TA-rich tract