1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATCCCTTCGTTTAAGATCTACAGTGGCGTCGCTGGACTTTTTGATTATGGTCCTCCTGGCTGTGCTATTAAATCCAATGTTCTCAGCTTTTGGCGTCAAgtaaggaacaacactattcacatttctctgtatttaaattcgacaagattttggttgtataaaccgagttagatttgttactaaacgtgattgaatggag...
species | Arabidopsis thaliana |
transcript | AT1G29880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCCTCCTGGCTGTGCTATTAAATCCAATGTTCTCAGCTTTTGGCGTCAA CATTTCATTCTTGAGGAGAACATGCTAGAAGTTGATTGTCCATGTGTGACAEST: gi|125221091|gb|EL235176.1|EL235176
genomic: GTCCTCCTGGCTGTGCTATTAAATCCAATGTTCTCAGCTTTTGGCGTCAAgtaaggaaca ... tcgtttgcagCATTTCATTCTTGAGGAGAACATGCTAGAAGTTGATTGTCCATGTGTGACA
EST: CTTTTGGCGTCAA CATTTCATTCTTGAGGAGAACATGCTAGAAGTTGATTGTCCATGTGTGACA
genomic: CTTTTGGCGTCAAgtaaggaaca ... tcgtttgcagCATTTCATTCTTGAGGAGAACATGCTAGAAGTTGATTGTCCATGTGTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCCCTTCGTTTAAGATCTACAGTGGCGTCGCTGGACTTTTTGATTATGGTCCTCCTGGCTGTGCTATTAAATCCAATGTTCTCAGCTTTTGGCGTCAAgtaaggaacaacactattcacatttctctgtatttaaattcgacaagattttggttgtataaaccgagttagatttgttactaaacgtgattgaatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttctct