Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAAGTATACATGTCAAAAGATTTCATAGAGATGATGTGGAGGAGGACTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccgtcccttgattttgtaacatatataacaaaacacttaatttgttgctcaaacaagtagtgtatatacaatgttag

Basic information

species Arabidopsis thaliana
transcript AT1G28700.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116434089|gb|EG476681.1|EG476681
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434085|gb|EG476677.1|EG476677
EST:     CAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434079|gb|EG476671.1|EG476671
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434087|gb|EG476679.1|EG476679
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGGTTAG                     
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCAC-----Ggttaggtccg ... acaatg
EST: gi|116434097|gb|EG476689.1|EG476689
EST:     CTCGCTTGCTCCTAGACGTCCTCAACCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434086|gb|EG476678.1|EG476678
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434081|gb|EG476673.1|EG476673
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434098|gb|EG476690.1|EG476690
EST:     CCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434093|gb|EG476685.1|EG476685
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434076|gb|EG476668.1|EG476668
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434100|gb|EG476692.1|EG476692
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434092|gb|EG476684.1|EG476684
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
EST: gi|116434080|gb|EG476672.1|EG476672
EST:     CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACG                         GATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC
genomic: CTCGCTTGCTCCTAGACGTCCTCAGCCGCGGCTACCATATTATTTTCACGgttaggtccg ... acaatgttagGATACGGACGTGATGTGGCTAAGGAGTCCCTTGTCCCGGCTAAACGTGAGC