1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctcttctcttctctccttacgattcctgcccaattcacacttgggttcctcaaagttgaatccttttgatagttttaggccaatttgttcatattctcatagtcatgtagtttagaggtagctcaagttgttgatgagtacctttttctcttcagGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTGCTTCTTCTGCTGCCTTTTTACCAGGAGACTCTTGGTTAAGTGAAACAA
species | Arabidopsis thaliana |
transcript | AT1G28140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGGTGTTTACGGTCCTTGGAC-ATTGACCAAGCCGATGTCAAAGAG GTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTEST: gi|86020816|gb|DR316562.1|DR316562
genomic: ACAAAGGTGTTTACGGTCCTTGGACCATTGACCAAGCCGATGTCAAAGAGgtctcttctc ... ttctcttcagGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCT
EST: ACAAAGGTGTTTACGGTCCTTGGACCATTGACCAAGCCGATGTCAAAGAG GTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCT
genomic: ACAAAGGTGTTTACGGTCCTTGGACCATTGACCAAGCCGATGTCAAAGAGgtctcttctc ... ttctcttcagGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCT
agtcatgtagtttagaggtagctcaagttgttgatgagtacctttttctcttcagGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTGCTTCTTCTGCTGCCTTTTTACCAGGAGACTCTTGGTTAAGTGAAACAA
tgttgat putative branch site (score: 4)
tacctttttctcttc putative PPT
tagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcttctcttctctccttacgattcctgcccaattcacacttgggttcctcaaagttgaatccttttgatagttttaggccaatttgttcatattctcatagtcatgtagtttagaggtagctcaagttgttgatgagtacctttttctcttcagGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTGCTTCTTCTGCTGCCTTTTTACCAGGAGACTCTTGGTTAAGTGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA