1 5' 3' | 2 5' 3' | 3 5' 3' |
GATTACACAAAGATGGAGAACAACAACAACGGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATACgtatgtcccttattctactctctttttttcgtattgtgatcacaacatttcgtaatagtaagtaaagttgtgtttattaatcttttttggattctcaatg...
species | Arabidopsis thaliana |
transcript | AT1G27380.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATAC GTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGAGATAGGATTTCEST: gi|19797647|gb|AU229387.1|AU229387
genomic: TATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATACgtatgtccct ... tgatgaccagGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGAGATAGGATTTC
EST: TATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATAC GTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGAGATAGGATTTC
genomic: TATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATACgtatgtccct ... tgatgaccagGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGAGATAGGATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTACACAAAGATGGAGAACAACAACAACGGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATACgtatgtcccttattctactctctttttttcgtattgtgatcacaacatttcgtaatagtaagtaaagttgtgtttattaatcttttttggattctcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaag