1 5' 3' |
ACAGTCAGGAAGCTCAAGAATCTCTGACGATCAGATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCTGACAAGgtatacacttcaaaataacaaattttaatctatctttcttgcatatacatacttattttgtatacttgtataacttagcctgcacatggacttagaaagt...
species | Arabidopsis thaliana |
transcript | AT1G26945.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACCTCATCCCTGAACTTCGCCGCCGCCGTTTCTTGACAAG GTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTEST: gi|47828821|gb|CK118505.1|CK118505
genomic: ACACCTCATCCCTGAACTTCGCCGCCGCCG-TTC-TGACAAGgtatacactt ... tattggacagGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTT
EST: CTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCTGACAAG GTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTAEST: gi|124868203|gb|EH952640.1|EH952640
genomic: CTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCTGACAAGgtatacactt ... tattggacagGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTA
EST: CGCCGCCGCCGTTCTGACAAG GTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTA
genomic: CGCCGCCGCCGTTCTGACAAGgtatacactt ... tattggacagGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGTCAGGAAGCTCAAGAATCTCTGACGATCAGATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCTGACAAGgtatacacttcaaaataacaaattttaatctatctttcttgcatatacatacttattttgtatacttgtataacttagcctgcacatggacttagaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttctt