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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatctttctctttagttcttctaagttggtcttgagtttcgaggcaacaacgtaaatcaatctctatgaacttcttttggattcagGTGTTAGGAAAGAGCATGGTTGTTGGTCTGGGAATAACTTTTTTTGCAGGACTTTCTTTCTCATTGTTCTCACCACTATTCAACCTTGCAACAAACGATC

Basic information

species Arabidopsis thaliana
transcript AT1G26440.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164189912|gb|ES052599.1|ES052599
EST:     AAGGGTCTGCAGCTTTTCTTATAGCACTCGAAAACAAAAGAGCAATCAAA                         GTGTTAGGAAAGAGCATGGTTGTTG
genomic: AAGGGTCTGCAGCTTTTCTTATAGCACTCGAAAACAAAAGAGCAATCAAAgtaggatctt ... ttggattcagGTGTTAGGAAAGAGCATGGTTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtttcgaggcaacaacgtaaatcaatctctatgaacttcttttggattcagGTGTTAGGAAAGAGCATGGTTGTTGGTCTGGGAATAACTTTTTTTGCAGGACTTTCTTTCTCATTGTTCTCACCACTATTCAACCTTGCAACAAACGATC
                                       cttctttt  CT-rich tract
                     taaatcaat  TA-rich tract