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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaacttgaaggattttgatctctataatggagattgcattgatgaatctcttgctgctgctgctacagATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGG

Basic information

species Arabidopsis thaliana
transcript AT1G26440.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031330|gb|DR327083.1|DR327083
EST:     TAGGTGAAAGTACACATGAGGCACCAAGTTTCATTACACAACTCACTCAG                         ATTCAAGATAATTGGCCCTCTGTGTTGTTTGCA-TGGCGG
genomic: TAGGTGAAAGTACACATGAGGCACCAAGTTTCATTACACAACTCACTCAGgttagaactt ... gctgctacagATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGG
EST: gi|152034429|gb|BP828455.2|BP828455
EST:     TAGGTGAAAGTACACATGAGGCACCAAGTTTCATTACACAACTCACTCAG                         ATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGGG
genomic: TAGGTGAAAGTACACATGAGGCACCAAGTTTCATTACACAACTCACTCAGgttagaactt ... gctgctacagATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatctctataatggagattgcattgatgaatctcttgctgctgctgctacagATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGG
                       cattgat  putative branch site (score: 4)
       tctataat  TA-rich tract