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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgttttgattagcctaatcgtgtgccatactattgtcattttcacgcttagcttttgtggagttgtatatgataactttgtcatcctccgtattgcagTGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGG

Basic information

species Arabidopsis thaliana
transcript AT1G25540.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25540.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA02G10880.1 (Glycine max), 3'ss of exon 13
---cttgttttgattagcctaatcgtgtgccatactattgtcattttcacgcttagcttttgtggagttgtatatgataactttgtcatcctccgtattgcagTGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGG
     |||| |    ||  |  |  | ||||     |   |    |||| |  | ||    | |   || | | || ||      |  |    || ||| ||||||||||| || || || |||||||||||| | || || ||||| |||||||| || | |||||||||||| |||||||| || |||
aacactgttatacgaagaat--ttctctgcctgtggaccattgaattcatgtctcgcaggagggattttttttgtggtactgaatttgttgctcg-atttcagTGTGCAGTTATTCAATTACCATCACAGACGTTGCTACTATCTGTTTCTGACAAAGCCTTCCGCTTGATTGGGATGCTTTTTCCTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgcttagcttttgtggagttgtatatgataactttgtcatcctccgtattgcagTGTGCAGTCATCCAGTTGCCATCACAGACGCTTCTTCTCTCTGTCTCTGACAAGGCTTGCCGCTTGATTGGAATGCTTTTCCCAGGG
                          tgataac  putative branch site (score: 2)
                                ctttgtcatcctcc  CT-rich tract
                      tatatgataacttt  TA-rich tract