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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTATCCTCAGATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagccattacatttttatttattctaatcattacatgttttacaagagtgtcgattttataatatttttcttacatctcatataattacggttttaaattattatcttcaatattcgggcag

Basic information

species Arabidopsis thaliana
transcript AT1G25230.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018676|gb|DR314422.1|DR314422
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCGGAS-TCTTCTTTGTTCGACACAACT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGT-CGACACAACT
EST: gi|124804094|gb|EH892105.1|EH892105
EST:     TGAGATCCTTCATCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: TGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
EST: gi|125247702|gb|EL261787.1|EL261787
EST:     TCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: TCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
EST: gi|124964834|gb|EL039069.1|EL039069
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGT
EST: gi|86018670|gb|DR314416.1|DR314416
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCGGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTATCCTCAGATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagccattacatttttatttattctaatcattacatgttttacaagagtgtcgattttataatatttttcttacatctcatataattacggttttaaattattatcttcaatattcgggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC