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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttgtttgtttgtaagttagacctggtttatttgtttgtagttattttccctttttaaaaaaccttactgggaactggtttattctgcaacattctcagGGCTGGAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGATGGTTTTTACACATCACTCT

Basic information

species Arabidopsis thaliana
transcript AT1G24267.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24267.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G29150.3 (Glycine max), 3'ss of exon 5
gcttgtttgtttgtaagttagacctggtttatttgtttgtagttattttccctttttaaaaaaccttactgggaactggtttat---tctgcaacattctcagGGCTGGAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGATGGTTTTTACACATCACTCT
   |  || ||| | |  |     |  |    |  | |    ||| | || |    |  ||    ||       | |  |||||   |||      ||  ||||| ||||| ||||| ||||| |||||||||||||||||  | || || ||||| || |    | |||| |  ||||| |      ||||   |||| |  
---taattttttattaaatgattttcttactataatcttaccttactatctccaactttaattttttttaaatgatttttttatggctcttgtgtgtttgcagGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCTATTGGTAATCAGATGGGAAAGCTTTATGAATCAATTG

upper sequence: AT1G24267.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA18G52020.1 (Glycine max), 3'ss of exon 5
gcttgtttgtttgtaagttagacctggtttatttgtttgtagttattttccctttttaaaaaaccttact-----gggaactggttt----attctgcaacattctcagGGCTGGAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGATGGTTTTTACACATCACTCT
       | |||  || | |    |  ||||| |     ||  ||| | |   | || ||  |||  |||       |||   ||||      |||    | ||  ||||| ||||| ||||| ||||| |||||||||||||||||  | || || ||||| || |      |||| |  ||||| |      ||||   |||| |  
-------tttttaaaaatgaattttcttttatctcaccata-ctatctccaaatcttcaactaccccactctcttatgaatgagttttatggctcttgtgcgtttgcaGGGATGGAAGCTTCCTGATCTGATGTTTGCAACAAGGCGTGGTTTGTCTGATGCTTGCACATCAATTGGTAATCAGATGGGAAAGCTTTATGAATCAATT-

upper sequence: AT1G24267.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv01s0010g03920.t01 (Vitis vinifera), 3'ss of exon 5
gcttgtttgtttgtaagttagacctggtttatttgtttgtagttattttccctttttaaaaaaccttactggg-aactggtttatt--ctgcaacatt---ctcagGGCTGGAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGATGGTTTTTACACATCACTCT
    ||||  |   ||   | | |   |||   |    ||    ||  |  |   | ||      ||  ||   | ||| |  | |   |||||| ||    | |||||||||| ||||| ||| | ||||||||||| ||||| || ||||||||||| ||   |    |||  |  ||| | ||   | ||||  ||||| |  
----gtttactgtcaaaccaaatcatatttcaataagagtg--catgataacgcctaaatgtttatttgtgattagctgatcgactaattgcaactttgaatttagGGCTGGAAGCTTCCTGATATGATGTTTGCAACGAGGCGTAGTTTATCAGATGCTTGCTCTTCAATTGCTAAACAGCTTGAGAATGTTTATTCATCAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccctttttaaaaaaccttactgggaactggtttattctgcaacattctcagGGCTGGAAACTTCCGGATCTTATGTTTGCAACAAGGCGCAGCTTATCAGATGCATGTAATAGTGTTGGCAGCCAGATCGATGGTTTTTACACATCACTCT
                 accttac  putative branch site (score: 3)
                                              cattctc  putative PPT
       tttttaaaaaacctta  TA-rich tract