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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaaaagaaagacaactctctaattctctaattccactttatatttttgtctcgatttacatataataaccttttagcattatggaaatgaaattgtagCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTAT

Basic information

species Arabidopsis thaliana
transcript AT1G23340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G23340.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA01G03390.1 (Glycine max), 3'ss of exon 3
aaaaaaagaaagacaactctctaattctctaat-tccactttatatttttgtctcgatttacatataataaccttttagca--ttatggaaatgaaat-tgtagCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTAT
     |  ||     | |   | ||  | |||  |   || ||    ||   || | |    ||||    || |   |  |  || ||    |||| |    ||||||| ||||| || ||    |||   || |||||||||||||| ||||| |||||||||||| | || || ||   ||  ||| | || || ||  | |
----tatcaattctgattgattgatgatgtaaaattttctatagtcattaaactggttacttatatgcagacttaacaataatttttgttggtgaactgcacagCATGCAGTTGGGTATGTGAGTGGAGAGCAGTACTACGGAGCAAAGGCAAGCATAAACGTGTGGGCACCCCGAGTGGCAAATCAAGATGAATTCAGCTTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtctcgatttacatataataaccttttagcattatggaaatgaaattgtagCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTAT
                   taataac  putative branch site (score: 1)
          atttacatataataac  TA-rich tract