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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttagttttccgttacattctctgtctcaattctgaaacttttcacatgggttgtgctcaaatttcctttttaatggttgtcgagatttatctataaagtcaatgatctgggtttgatcaaagtctcaatctttctcttaaatttcgaatatttgatgatcccacgagttagTCTCTCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGCTCTCAAGCTCTGGATTTGATTGTATCATGAAAAGTTATCCAATTGGATCGAGTA

Basic information

species Arabidopsis thaliana
transcript AT1G21370.2
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaagtctcaatctttctcttaaatttcgaatatttgatgatcccacgagttagTCTCTCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGCTCTCAAGCTCTGGATTTGATTGTATCATGAAAAGTTATCCAATTGGATCGAGTA
                                 atttgat  putative branch site (score: 5)
                    ttaaatttcgaatatt  TA-rich tract