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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaatctagataaattttcggtttcctcttgctgtgacagtttctgatcactgtccatgtgttttttttattacctttatgcatagctattatcttgaaagttttgtgggtttgttctataaaatactcaagattctgaccttttttttgggtttttttgttggcatagCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGATGTTCCTTGACTCACAAGTCACAAGTAATCTTCGAAGGTCCTGTCATCAA

Basic information

species Arabidopsis thaliana
transcript AT1G19010.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080336|gb|DR376093.1|DR376093
EST:     GCACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGTCAG                         CTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGAT
genomic: GCACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGTCAGgttagtgaat ... gttggcatagCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctataaaatactcaagattctgaccttttttttgggtttttttgttggcatagCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGATGTTCCTTGACTCACAAGTCACAAGTAATCTTCGAAGGTCCTGTCATCAA
                   ttctgac  putative branch site (score: 2)
                                      tttttttgtt  putative PPT
                                      tttttttgtt  TA-rich tract