1 5' 3' | 2 5' 3' | 3 5' 3' |
...attataacatttttggtcttgaaacgaacaagaaactgatagagaaaacagaggattttatgaacagagtaacttaatgctctgtttcttaatttggtagGAAATGAGACATTTGAAAAATTGGGGATTGTTGGAAGTTCATCGAATCTGGTTATATACTTAACGACGGTTTTCAACATGAAGAGCATCACGGCTGCGAA
species | Arabidopsis thaliana |
transcript | AT1G18880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaacagaggattttatgaacagagtaacttaatgctctgtttcttaatttggtagGAAATGAGACATTTGAAAAATTGGGGATTGTTGGAAGTTCATCGAATCTGGTTATATACTTAACGACGGTTTTCAACATGAAGAGCATCACGGCTGCGAA
tttctta CT-rich tract
tttcttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attataacatttttggtcttgaaacgaacaagaaactgatagagaaaacagaggattttatgaacagagtaacttaatgctctgtttcttaatttggtagGAAATGAGACATTTGAAAAATTGGGGATTGTTGGAAGTTCATCGAATCTGGTTATATACTTAACGACGGTTTTCAACATGAAGAGCATCACGGCTGCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- tataaca
- - - - -tttttgg
- - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - - - - - - - aacagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttaa