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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtatatactgttgttatagcatacaacttgcaaggatttttcttgttataaaatttctcagctttagacatatcttggtgcaaactttgaaacaactagctttttgatgttcgacttcatagGTAACTTGATAGAGGGAGACGATGAGATTAACGAAACCATGAAAGAAGAAACATTGTGTTTTGATGAAGGACCGGTGACCAAGAGTATACCTTTGGCTCC

Basic information

species Arabidopsis thaliana
transcript AT1G17830.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatatcttggtgcaaactttgaaacaactagctttttgatgttcgacttcatagGTAACTTGATAGAGGGAGACGATGAGATTAACGAAACCATGAAAGAAGAAACATTGTGTTTTGATGAAGGACCGGTGACCAAGAGTATACCTTTGGCTCC
                                  ttttgat  putative branch site (score: 4)
                                 tttttgat  TA-rich tract