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gtcagatatcaacctctctttctccttacaacaatcacatatatatatatatatacacatagctctcaccgacctcattaattatatattttctctcagATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATTGTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCT
species | Arabidopsis thaliana |
transcript | AT1G17540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCTCGGAAAGGG ATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATTEST: gi|86059042|gb|DR354799.1|DR354799
genomic: AGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCTCGGAAAGGGgtcagatatc ... tttctctcagATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATT
EST: AGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCTCGGAAAGGG ATTATAGCAACGNAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATN
genomic: AGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCTCGGAAAGGGgtcagatatc ... tttctctcagATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATT
atatatatatacacatagctctcaccgacctcattaattatatattttctctcagATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATTGTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCT
cattaat putative branch site (score: 3)
tattttctctc putative PPT
tcattaattatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagatatcaacctctctttctccttacaacaatcacatatatatatatatatacacatagctctcaccgacctcattaattatatattttctctcagATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATTGTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG