1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagagtaaataatgttcaagaaagattgtgctaagtaattaaccaaaagaaaaaagattgttgagtaacaacgatgtttctggtttaataatgttttcagGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTAAGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTC
species | Arabidopsis thaliana |
transcript | AT1G15950.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCAA GTGCAAGGACGAGAAGAAEST: gi|124937307|gb|EL014091.1|EL014091
genomic: GTTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCAAgtaagtgaac ... atgttttcagGTGCAAGGACGAGAAGAA
EST: CTATTCCCGGAGTATCCTCTTCCGACCAA GTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAEST: gi|124914006|gb|EH987880.1|EH987880
genomic: CTATTCCCGGAGTATCCTCTTCCGACCAAgtaagtgaac ... atgttttcagGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCA
EST: TTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCAA GTGCAAGGACGAGAAGAACCCTAGAGCCCAAGCCATACAAATTCACTAACC
genomic: TTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCAAgtaagtgaac ... atgttttcagGTGCAAGGACGAGAAGAACCCTAGAGCC-AAGCCATACAAATTCACTAACC
aaagaaaaaagattgttgagtaacaacgatgtttctggtttaataatgttttcagGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTAAGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTC
tgttttc CT-rich tract
tttaataatgttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagtaaataatgttcaagaaagattgtgctaagtaattaaccaaaagaaaaaagattgttgagtaacaacgatgtttctggtttaataatgttttcagGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTAAGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - aaataat
- - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaa