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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTTAAGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtctttttcttgggttttctatttgttttatcgcatttttagtggcttacagagagaatcgaataaagttaaggacctacatgaaataaaataata...

Basic information

species Arabidopsis thaliana
transcript AT1G15950.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116464127|gb|EG506719.1|EG506719
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
EST: gi|47829558|gb|CK119242.1|CK119242
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
EST: gi|19875544|gb|AU236375.1|AU236375
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
EST: gi|116438546|gb|EG481138.1|EG481138
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
EST: gi|116464136|gb|EG506728.1|EG506728
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
EST: gi|116438547|gb|EG481139.1|EG481139
EST:     ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCG                         GAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT
genomic: ATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGgtgagtcttt ... caattttcagGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCT