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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgagtactctttgtttcaacttgagctgaatattaatgtccatcaattagttcagtatcaaagaatgttgcttggttctcagtaatgctttctgttttgtctccagactttctgttctctaagtgttttctctcgtttctgcgatgtcttgttgttggtatagATGACAGAATGGTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTATGCTTGTCGGCTTGATCTGATTTCCAAGGTACGTGGCTGGTACAAGG

Basic information

species Arabidopsis thaliana
transcript AT1G15480.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15480.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g05090.t01 (Vitis vinifera), 3'ss of exon 2
gtactgagtactctttgtttcaacttgagctgaatattaatgtccatcaattagttcagtatcaaagaatgttgcttggttctcagtaatgctttctgttttgtctccagactttctgt-tctctaagtgttttctctcgtttctgcgatgtcttgttgttggtatagATGACAGAATGGTTAGACGAAAATAAGCAGTTTGAAATGGAGGAGAGAGATTATGCTTGTCGGCTTGATCTGATTTCCAAGGTACGTGGCTGGTACAAGG
                                                                       |   ||    || | |     ||    || | |      |  || |||  |||| |   ||||   || ||  |   || |||  ||| |  |  || |  |||| ||| | || ||| ||||| || |||| ||||  |||||||||||||||| |||  ||||| ||||| |||||||||||||     | ||||
--------------------------------------------------------------------ccttcatttttgccttaattcaatttcaatttctttagaggcatgttttgtacctcttatcatttttattccttcttcttatatctatttggttttgcagTTCTCAGAGTGGATGGAAGAACATAAGAAGCTTGATATGGTCGAGAGAGATTATGCTTCTCGTGTTGATTTGATTGCCAAGGTACGTGGTCTTCAGAAGG