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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcgaataatattgctacggatctgatgttggtgctttgtcttttacaatttttaattatgtgaactttcagATTTCGACATTTTGAGGAGCTTCACCGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCAACAGGCGTGGACATA

Basic information

species Arabidopsis thaliana
transcript AT1G15240.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15240.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G21950.1 (Glycine max), 3'ss of exon 8
----------------------------------gtgatcgaataatattg--ctacggatctgatgttggtgctttgtcttttacaatttttaattatgtgaactttcagATTTCGACATTTTGAGGAGCTTCACCGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCAACAGGCGTGGACATA
                                     |   |||  | |    |||| |   |       ||   |||| ||      |||||  |  |      ||| || ||||| |||||||||||||| || ||||| || |||| ||| |||||||| || |||||||| || ||||| ||||| || ||||| ||  | ||  ||
gtgctaagtttctgctatgtcttatatcaatgtttctaataaatgttttcagtctacagtgttttcacacgtttcttgttttccttccttttttttattacattttttgagGTTTCGCCATTTTGAGGAGCTACATCGACGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCACCAAAACATTTTCTGTCAACTGGTTTAGATGTA

upper sequence: AT1G15240.3 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G00690.1 (Glycine max), 3'ss of exon 6
----------------------------------gtgatcgaataatattgctacggatctgatgttggtgctttgtcttttacaatttttaattatgtgaactttca-gATTTCGACATTTTGAGGAGCTTCACCGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCAACAGGCGTGGACATA
                                     |   || ||| |   | |   | || | |      ||| |  ||| |  ||||| ||||  | |  ||| | | ||||| |||||||||||||| || ||||| || |||| |||  | ||||| || |||||||| || ||||||||||| || ||||| ||  | ||  ||
gtgctaagtttctgctatgtcttatatctctgtttctaataaaaaatttcagt-ctactgtgttttcaaatatttcttgttttcctttttttattacattattttttaagGTTTCGCCATTTTGAGGAGCTACATCGACGCCTGAAAGAGTTCGCCGAGTATAATCTTCATTTGCCACCAAAGCATTTTCTGTCAACTGGTTTAGATGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggatctgatgttggtgctttgtcttttacaatttttaattatgtgaactttcagATTTCGACATTTTGAGGAGCTTCACCGACGGCTAAAAGTGTTTCCTGAGTACAAACTTCATTTACCGCCAAAGCATTTCCTATCAACAGGCGTGGACATA
                                 ttttaat  putative branch site (score: 3)
                                                ctttc  putative PPT
                        ttttacaatttttaat  TA-rich tract