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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtcatcatttcttcctgcttcttcccttttacctctctgcccatttctcgtaatcctcaatttggttttgaattttacttag

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G110834_T01 (Zea mays), 5'ss of exon 2
-GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgag-tcatcatttcttcctgcttcttcccttttacctctctgcccat---ttctcgtaatcctcaatttggttt--tgaattttacttag--------
   | |          ||  |  |||| | ||||||||||| |||||||| ||||||||||| || ||||| ||  | || || ||  | || ||| | ||||||| ||||  | | ||  |   |    | |||||       |  |||   || | | |||  | |    ||  |  |       ||| ||        
TAAGATCACTAGATCATTTTGG-TGATGTAGATCCATGGACGGCATGGGCATACAAGCCTCGAACGATCTCGCTCTTGCTGATGGGAACATGCTTTTTAATgtgagctcatagtctttttatctgtggaacattttatagacaggaacatgcttttttgaaataataataagggcctgcttggaaccactcagtttttaag

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 4
-GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtcatcattt-----------cttc--ctgcttcttcccttttacctctctg----cccatttctcgtaatcctcaatttggttttgaattttacttag--------------------------
     | ||    ||  |||   ||| | ||||||||||||||||||||| |||||||||||||| ||| |  |  | |||||||||||||| ||||| ||||||||  | |  |           | ||  |   |  |    ||||| ||   ||        ||  ||   |   | |||||  | |       ||||||                           
CCCATTTGTCA-AATAATGATGATGAACATGATCCATGGACTGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGCGCTTGCTTTCTTATgtgagtgtttagctggataaattaacgtcaacaagtggtgtatttttatctacttggaaatttgttcttcaataaaattaattttctctccc-ccctacttaattttttcatatcattgtatataccag

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 2
-GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtc-------------atcatttcttcctgcttcttcccttttacctctctgcccatttctc-----gtaatcctcaatttggttttgaattttacttag--------------------------
     | ||    |||||||   ||| |||||||||||||| |||||||| |||||||||||||| ||| |  |  | |||||||| ||||| ||||| ||||||||              || | |     |   | ||    ||||| ||   ||   |||| |       |||   | | |||            ||||||                           
CCCATTTGTTA-AATGTTGATGATGAACTTGATCCATGGACCGCATGGGCATACAAGCCTCGCACCATCACATTGTTACTTATTGGTGCTTGCTTTCTTATgtgagtatttagctggataaattaatgtcaacaagtgctgaatttttatctacttggaaatttgttcttcaataaaattaattttctcccccccccctacttaatttttttatatcattgtatttaccag

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 2
GTGGTGGTGGTGATGTTGAGACTGATCTTGATCCATGGACTGCATGGGCTTACAAGCCTCGCACTATCTCTCTTCTCCTTATTGGCGCTTGTTTTCTCATgtgagtcatcatttcttcctgcttcttcccttttacc---tctctgcccatttct-----cgtaatcctcaatttggttttgaattttacttag------
|  |         |||||    ||| | ||||||||||||||||||||| ||||| ||||| || || ||  |  | |||||||| || |||||||| |||||||| | |  |       |    || | | |||     |   || | || |||     |  | |  | |||  | |  |  ||  | || |       
GCAGCTTATCAAGTGTTGGTGATGAACATGATCCATGGACTGCATGGGCATACAAACCTCGTACCATTTCATTATTACTTATTGGTGCATGTTTTCTTATgtgagtgacctatcaaataagtagtttacatcttattaaattgatggctatatctgttgtcagattattgaataggataatttatggtgctaattatgaa