1 5' 3' |
CTCCATTGAAGCCTCTTTTCTCAGATTCTACGCTTCACTGTCTCTTCTCCATGTGCGTCTCCTCCTCCTCCGTTTCTTCAGATCTTGCTTTCCGGTGACGgtgagttgttcttcttcatcgataccttctatttcgaaatatcctttaaatttcgtttctttggttttgattttctcatttggttcctcgatttgtgtaa...
species | Arabidopsis thaliana |
transcript | AT1G13640.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTCCGGTGACG GTTTTAATCTTCTTCTCTCTGGTAACACGTATAAAGCATGGCTTACCTGATEST: gi|124719245|gb|EH810647.1|EH810647
genomic: CTTTCCGGTGACGgtgagttgtt ... tttgattcagGTTTTAATCTTCTTCTCTCTGGTAACACGTATAAAGCATGGCTTACCTGAT
EST: GTTTCTTCAGATCTTGCTTTCCGGTGACG GTTTTAATCTTCTTCTCTCTGGTAACACGTATAAAGCATGGCTTACCTGAT
genomic: GTTTCTTCAGATCTTGCTTTCCGGTGACGgtgagttgtt ... tttgattcagGTTTTAATCTTCTTCTCTCTGGTAACACGTATAAAGCATGGCTTACCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCATTGAAGCCTCTTTTCTCAGATTCTACGCTTCACTGTCTCTTCTCCATGTGCGTCTCCTCCTCCTCCGTTTCTTCAGATCTTGCTTTCCGGTGACGgtgagttgttcttcttcatcgataccttctatttcgaaatatcctttaaatttcgtttctttggttttgattttctcatttggttcctcgatttgtgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttcttc