Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124764934|gb|EH855064.1|EH855064EST: ATGGAGAATCTTTCAAACTCACAACAGATCATCTCAAAGGAATCATCTCG GACATATTTCTTGCAGGAGTAAA
genomic: ATGGAGAATCTTTCAAACTCACAACAGATCATCTCAAAGGAATCATCTCGgtaaatcttc ... tttgtatcagGACATATTTCTTGCAGGAGTAAA
EST:
gi|125215333|gb|EL229431.1|EL229431EST: TCAAAGGAATCATCTCG GACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCG
genomic: TCAAAGGAATCATCTCGgtaaatcttc ... tttgtatcagGACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCG
EST:
gi|125239178|gb|EL253263.1|EL253263EST: TCAAAGGAATCATCTCG GACATATTTCTTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGC
genomic: TCAAAGGAATCATCTCGgtaaatcttc ... tttgtatcagGACATATTTC-TTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGC
EST:
gi|125149955|gb|EL182866.1|EL182866EST: AAAGGAATCATCTCG GACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCG
genomic: AAAGGAATCATCTCGgtaaatcttc ... tttgtatcagGACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCG
EST:
gi|116467393|gb|EG509985.1|EG509985EST: TGGAGAATCTTTCAAACTCACAACAGATTCATCTCAAAGGAATCATCTCG GACATATTTCTTTGCAGGAGTAAACACAAGCGCCCGTCACTTTGAACTGGG
genomic: TGGAGAATCTTTCAAACTCACAACAGAT-CATCTCAAAGGAATCATCTCGgtaaatcttc ... tttgtatcagGACATATTTCTT-GCAGGAGTAAACACAAGCGCC-GTCACTTTGAACTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacgaagctaaactcttgtaaagatttgaacttacgcgtctgtgttttgtatcagGACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCGATGGCCGAGCTGATCAGAAACCCGAGAGTGATGAAGAAAGTGCAAGACG
aacttac putative branch site (score: 2)
taaagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcttcttcttagacgaagctaaactcttgtaaagatttgaacttacgcgtctgtgttttgtatcagGACATATTTCTTGCAGGAGTAAACACAAGCGCCGTCACTTTGAACTGGGCGATGGCCGAGCTGATCAGAAACCCGAGAGTGATGAAGAAAGTGCAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA