1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGTTGAAGCATGCAAAAGGAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctcttttatcactttacttttagttttgtttgcagactttgacgatgtttagctgtgagctctcttaagaattcctccaaaaatatgcatcct...
species | Arabidopsis thaliana |
transcript | AT1G13060.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCT CCTCACAATCTGTGAAGAAGAEST: gi|116463327|gb|EG505919.1|EG505919
genomic: TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctc ... ccacattcagCCTCACAATCTGTGAAGAAGA
EST: GCTGATTTCTCGGGCTAGCATGAGAAGGATATATCT CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTAEST: gi|116444339|gb|EG486931.1|EG486931
genomic: GCTGA-TTCTCGGGCTAGCATG-GGAGGATATATCTgtatgttctc ... ccacattcagCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTA
EST: TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCT CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTA
genomic: TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctc ... ccacattcagCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTGAAGCATGCAAAAGGAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGGAGGATATATCTgtatgttctcttttatcactttacttttagttttgtttgcagactttgacgatgtttagctgtgagctctcttaagaattcctccaaaaatatgcatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata