1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTGAGGATACTTGGATCTTCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatctcttctcgggtcactttggtttttgtttgagaagaaagatttgaacatcaaaagaaagaagatatattttctcagctcatagaacatgta...
species | Arabidopsis thaliana |
transcript | AT1G12520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTACEST: gi|124820730|gb|EH905596.1|EH905596
genomic: TTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTT-C
EST: CGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCGEST: gi|125223499|gb|EL237584.1|EL237584
genomic: CGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCG
EST: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAEST: gi|125042108|gb|EL114377.1|EL114377
genomic: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCA
EST: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAGAATEST: gi|124825645|gb|EH910511.1|EH910511
genomic: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCAGAAT
EST: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCGEST: gi|125238445|gb|EL252530.1|EL252530
genomic: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCG
EST: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCGEST: gi|124893088|gb|EH971990.1|EH971990
genomic: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCTGACATTTTCG
EST: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAG ATTTCTTAGTCTCA
genomic: GGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatc ... gttttggcagATTTCTTAGTCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGAGGATACTTGGATCTTCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATTGGACAAGGTGTTCCTCAAGgttagatatctcttctcgggtcactttggtttttgtttgagaagaaagatttgaacatcaaaagaaagaagatatattttctcagctcatagaacatgta
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA