Sequence
atgc intronic sequence ATGC exonic sequence...tacttttttttgtctcagtgatgtctggatatgtcaagttatttcttcaaaagttggatcaatcaatgatgtcttatctgtgatcactgatcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGAGTGTGCTTAATTGTGT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G11360.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124775488|gb|EH865617.1|EH865617EST: TAAGCAGTAGCAGCAAGGTTGACTTTGAATGCAT GCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGNGACTTAGAAAGAAAAGA
genomic: TAAGCAGTAGCAGCAAGGTTGACTTTGAATGCATgtcagtttca ... tcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
EST:
gi|86069702|gb|DR365459.1|DR365459EST: ACCATGATGCTTCGGATAAGCAGTAGCAGCAAGGTTGACTTTGAATGCAT GCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
genomic: ACCATGATGCTTCGGATAAGCAGTAGCAGCAAGGTTGACTTTGAATGCATgtcagtttca ... tcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaaaagttggatcaatcaatgatgtcttatctgtgatcactgatcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGAGTGTGCTTAATTGTGT
cactgat putative branch site (score: 3)
aatcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttttttttgtctcagtgatgtctggatatgtcaagttatttcttcaaaagttggatcaatcaatgatgtcttatctgtgatcactgatcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGAGTGTGCTTAATTGTGT
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