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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaatccaaactttcactttccaaccaaaccctagaaaaaaagattccaacctaatttttttattatctttttctagGTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGTTTATGAAAGACTCTGTTAACGATCGAACCGATAGTTACGGCGGATCTCT

Basic information

species Arabidopsis thaliana
transcript AT1G09400.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877790|gb|AU238621.1|AU238621
EST:     GACAATTATCAATGATTTTCGTCTCGCTGCAAGAAACGCAACCGAAGCTG                         GTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGT
genomic: GACAATTATCAATGATTTTCGTCTCGCTGCAAGAAACGCAACCGAAGCTGgtaaaaaaat ... ctttttctagGTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccaaaccctagaaaaaaagattccaacctaatttttttattatctttttctagGTTTTGATGGAGTAGAGATCCATGGAGCTCACGGGTACTTGATTGACCAGTTTATGAAAGACTCTGTTAACGATCGAACCGATAGTTACGGCGGATCTCT
                           acctaat  putative branch site (score: 3)
                                 tttttttattatcttt  CT-rich tract
                          aacctaatttttttat  TA-rich tract