1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaataatatgtctaacactctgatttctttgagtttaccgacacttcgacatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcagAAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATGGGTCTG
species | Arabidopsis thaliana |
transcript | AT1G08660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAG AAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGTEST: gi|164149333|gb|ES072429.1|ES072429
genomic: TCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGgtaataatat ... tatgttgcagAAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGT
EST: TTGACAGTCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAG AAGTATGCCAAGTACGTAGGAGT
genomic: TTGACAGTCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGgtaataatat ... tatgttgcagAAGTATGCCAAGTACGTAGGAGT
gaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcagAAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATGGGTCTG
ttttgat putative branch site (score: 4)
ttatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatatgtctaacactctgatttctttgagtttaccgacacttcgacatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcagAAGTATGCCAAGTACGTAGGAGTGAAAAGGGATTTCCGACTAGTTGTTCGTGGTGCAGCTCGTAACATGATTAAGATTCTCAATGGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC