Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116484426|gb|EG527018.1|EG527018EST: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
EST:
gi|47827908|gb|CK117592.1|CK117592EST: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
EST:
gi|86040287|gb|DR336042.1|DR336042EST: AC-GGTCGTCCAGCAATCGTTTTCGGASCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGGAGAAAGGTGTGAA
genomic: ACCGGTCTTCCAGCAATCGTTT-CGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGG-AGAAAGGTGTGAA
EST:
gi|116484406|gb|EG526998.1|EG526998EST: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
EST:
gi|86040288|gb|DR336043.1|DR336043EST: TACCGGTCATCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTNGTGGAGGCAGATAAATCAGGAGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAA
EST:
gi|47828833|gb|CK118517.1|CK118517EST: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
EST:
gi|86040286|gb|DR336041.1|DR336041EST: TACCGGTCGTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
EST:
gi|301502715|gb|HO208255.1|HO208255EST: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAG AGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
genomic: TACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgct ... ccttgtacagAGTACATTGAGAAGCTAGTGGAGGCAGATAAATCAGGAGAAAGGTGTGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTTTCGATTCTCCGACGCGGTCCCATCGCTCCTCATGTCAATTGGTTTACCGGTCTTCCAGCAATCGTTTCGGAGCTTCTAATGTTTCACACTTCAGgtacatcgctctaaggttcgcagaaaagaaggaacttttataaaaacctgtttctgaatttggtagttttgacaaatcttaaccttaaaaaattcgactttgatttgtgattattgctttctcatgtaatccattgtgatccttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT