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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAATGCAGGTTTAGGTATCACTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCTCCTTCCGAACACACACTCAATGGCAAAAGgtatatatctctactcgtatacatttgagatatgattagagggaaacatatcttaatcaaaacaaggcttacgttttcaagatatggggtttttttttttttgagataatgattaggatgcatgcaaagatttgaataatgcacatgtaatatag

Basic information

species Arabidopsis thaliana
transcript AT1G08065.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08065.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g02590.t01 (Vitis vinifera), 5'ss of exon 3
---GAGGAAATGCAGGTTTAGGTATCACTATTAATGGTACTGAATATAAACTTCAACAGATTCATTGGCACTCTCCTTCCGAACACACACTCAATGGCAAAAGgtatatatctctactcgtatacatttgagatatgattagagggaaacatatcttaatcaaaacaaggcttacgttttcaagatatggggtttttttttttttgagataatgattaggatgcatgcaaagatttgaataatgcacatgtaatatag
     ||  ||||||| |     ||    || ||||| ||| | ||| ||||  ||||    || |||||||||||||||||||||||  |||||||||| ||||   |         |    || |||    |    |||        ||||    |      ||||    || |     ||    |||  ||| || ||  ||  ||  |     ||                                       
GGGAGGGCGATGCAGGATC---CATTCAGATAAATGGAACTAAGTATGAACTCAAACAATGCCACTGGCACTCTCCTTCCGAACACACTGTCAATGGCAAGAGgtgcttcatctcctccactcactttt----ttccctta--------catacaacaccagggacaactgatatgg----aacggttggcttttcttcttcattttgactacctacag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084323|gb|DR380082.1|DR380082
EST:     GCACTCTCCTTCCGAACACACACTCAATGCCAAAAG                         GTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGACGCAACGC
genomic: GCACTCTCCTTCCGAACACACACTCAATGGCAAAAGgtatatatct ... tgtaatatagGTTTGTTCTTGAGGAACACATGGTTCATCAGAGCAAAGATGGACGCAACGC