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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttcaagaaccatcttcgtacatactagattgaagatatataatacagaagttcatgaggcagtgcactttttttgtttttcatgatattaaaaatgtatcattgctgtttctatgtatccagATATATGTTCCAACCAATCCGCATGGTGCAGAACTACTTCCTCCTGGGATTATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTGAACCTA

Basic information

species Arabidopsis thaliana
transcript AT1G08040.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124779917|gb|EH869860.1|EH869860
EST:     TTTCTGGTGGCAGATCACCTGAAGATATTGGTTCAAGAAAGTCTCCTAAG                         ATATATGTTCCAACC
genomic: TTTCTGGTGGCAGATCACCTGAAGATATTGGTTCAAGAAAGTCTCCTAAGgtatatttca ... atgtatccagATATATGTTCCAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtttttcatgatattaaaaatgtatcattgctgtttctatgtatccagATATATGTTCCAACCAATCCGCATGGTGCAGAACTACTTCCTCCTGGGATTATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTGAACCTA
                                        tttctat  CT-rich tract
        tttttcatgatattaa  TA-rich tract