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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacattatctcttagtggttcagtatcgtgttaaatggtttgcttgatgatattattgacagtatctgctagagttcaacattacgcatcttgaggttcattatgatgactgattcttttgagttaaatgcttatgagttgtgaaatcataatgaaaatacagGTACTAGTTCAGGTAGGAGATATACTTGATCGCGGTGATGATGAAATCGCAATACTCTCCTTATTGAGGTCACTTGATGATCAGGCCAAGGCTAATGGTG

Basic information

species Arabidopsis thaliana
transcript AT1G07010.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396058|gb|EG438650.1|EG438650
EST:     CTGGCGTCTTGAGCTCCGACGGACGAGACCAGTGGGTCGGCCAAG--A-C                         --AC-----C--GTAGGAGATATACTTGATCGCGGTGATGATGAAATCGCA
genomic: CTGGCGTCTTGAGCTCCGACGGACGAGACCAGTGGGTCGGCCAAGACACCgtatgtacat ... gaaaatacagGTACTAGTTCAGGTAGGAGATATACTTGATCGCGGTGATGATGAAATCGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgattcttttgagttaaatgcttatgagttgtgaaatcataatgaaaatacagGTACTAGTTCAGGTAGGAGATATACTTGATCGCGGTGATGATGAAATCGCAATACTCTCCTTATTGAGGTCACTTGATGATCAGGCCAAGGCTAATGGTG
 gactgat  putative branch site (score: 3)
                                   aaatcataatgaaaat  TA-rich tract