1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtctcactatctatagttattagtgactgagccaaaacttgttctcactactcttcaactaacaccatgattacttgtatgaaattgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAG
species | Arabidopsis thaliana |
transcript | AT1G05900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA GGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGEST: gi|86044415|gb|DR340170.1|DR340170
genomic: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTAgtaagtctca ... tgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTG
EST: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA GGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGEST: gi|86044416|gb|DR340171.1|DR340171
genomic: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTAgtaagtctca ... tgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTG
EST: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA GGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTG
genomic: TGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTAgtaagtctca ... tgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTG
gttctcactactcttcaactaacaccatgattacttgtatgaaattgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAG
aactaac putative branch site (score: 1)
ttgtttt putative PPT
tatgaaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctcactatctatagttattagtgactgagccaaaacttgttctcactactcttcaactaacaccatgattacttgtatgaaattgttttgcagGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAGCCCTTCTGCATCGTCGATCAAAACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC