Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878087|gb|AU238918.1|AU238918EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGNTGTGAAAGCCAGGCTCNAATACT
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACT
EST:
gi|47830288|gb|CK119972.1|CK119972EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
EST:
gi|86074900|gb|DR370657.1|DR370657EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
EST:
gi|47831984|gb|CK121668.1|CK121668EST: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCG GTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
genomic: TCCACTGGTCACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGgtaaatatct ... ttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attggaaaattgggatatgaagtctgaatgttttcaattttgttgttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACGTCTG
aatgttttcaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacagaggccacaaatctgactttgagaattgagatggcaataattggaaaattgggatatgaagtctgaatgttttcaattttgttgttggttacagGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA