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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctcttatgcatgatgcattggctcaataacgattatggttcacgacaccaattgtgaacacatcatctgttacaaacgctgtccgtattcaatatgccccatctcaatatgttttttgaccgctttttaactcttttacgtctcagATTTGACAAGGAAAATAACAAGGGGGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCCTCTTCTTAACATACTTGGGATTGTAT

Basic information

species Arabidopsis thaliana
transcript AT1G05820.1
intron # 11
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgccccatctcaatatgttttttgaccgctttttaactcttttacgtctcagATTTGACAAGGAAAATAACAAGGGGGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCCTCTTCTTAACATACTTGGGATTGTAT
                                 ttttaac  putative branch site (score: 2)
                               ctttttaactctttt  CT-rich tract
                                tttttaactctttta  TA-rich tract