1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGgttcccttatcttactttttctgtttaggtcagctgaatccatttccagagttctctctagttcatgatccatattgatacataaacacattttcatatacaaacgcag
species | Arabidopsis thaliana |
transcript | AT1G05805.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAG AATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGATGCAGTGAGAAACCAEST: gi|125258123|gb|EL272208.1|EL272208
genomic: TGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGgttcccttat ... acaaacgcagAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAGTGAGAAACCA
EST: TGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAG AATTTAGAAAAAAGATCAAGAGAAT
genomic: TGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGgttcccttat ... acaaacgcagAATTT-GAAAAAAGATCAAGAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGgttcccttatcttactttttctgtttaggtcagctgaatccatttccagagttctctctagttcatgatccatattgatacataaacacattttcatatacaaacgcag
- - - - - - - - - - GCTGGA