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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgtaagtttcttcgttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca...

Basic information

species Arabidopsis thaliana
transcript AT1G05790.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g67420.1 (Oryza sativa), 5'ss of exon 7
TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgtaagtttct--tcgttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca
    ||||| || ||||||||||||||||| ||||||||||| ||||| || |   | | | | ||  |  | ||||||  |  ||||||  || |   ||| | |      ||    ||| ||||| ||   ||       |||      ||   |  | |  ||| ||  | || ||| ||                   
AGTTCTTGAAGGCGATAATTGGTGGCGAGGGCATGCAGCTGCTTTCCTAAAATATGTCAGTGTACCCCCGGAAGTTCTTATAAAAGGCCGTGTTAGCCAGgttaatcagcagtctacctcaccttctatttacaattttgttatggcgtgtgacgaacctaag-gttttgtattctgtatgtag------------------

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 5
TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgt----aagtttcttcgttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca
 | ||| ||||||||||| ||||||||||||||||| || ||||| || ||||   | ||||| ||| |  | |  |||  ||  || ||| |  |   |||     | |||    ||    || ||||  | |||  |   |  || |   |||  || | |  |    |||      |  | | |  |  |   |   |  |
CATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCAGCCAGgttagagaatttaaatgtccaaatgttct-ctacaatgctttggttgta---ggagacacaggtttaccatgcaaaaaatccaaaagaataaaattctgtacaa

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G39210.1 (Glycine max), 5'ss of exon 6
TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgt----aagtttcttcgttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca
|  ||| ||||||||||| ||||||||||||||||| || ||||| || |||| | | ||||| ||| |  | |  ||| |||  || ||| |  |   |||    || |||     |    || ||||  | |||  |   |     |   |||  || | |  |    | |     |   | ||  |   | |    |   |
TGTACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTACGTCAATTTGCCTCCAGAAGCGCTTAGACATGGGCGAGTCAGCCAGgttagaaaatttaaatatccaaatgttct-ctacaatgctttggtcata---ggagacacaggtttaccatacaaaaatgcaaaataataaaatgctgtataaa

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 5'ss of exon 5
TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgtaagtttcttc----gttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca
|  |||| | |||||||| |||||||||||||||||||| ||||| || || |   |   |||  |  |  | || ||||||| ||| ||  |||||  ||| ||||| |||      | || |  | |  |     |  ||  |||| || | |   ||     | || | | |   ||  |||                   
TGTACTTCAGGGTGATAACTGGTGGCGAGGTCATGCAGCAGCCTTTCTGAAATATGTTCGTTTATCCCCAGAAGTACTTCGACTAGGTCGTGTTTGTCAGgtgagtttgttccaaaagtgtcttagtatcctatgtgaagaaatatgagaaagaaaaaatgattctatttttcatttcttgaatag------------------

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ09300 (Selaginella moellendorffii), 5'ss of exon 3
TAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTAGGgtaagtttcttcgttttcatcttctgttccaaaaccaagaatgaaaatggattcatatgaatgttgtgcctcctttatatatggttccacgaccaaagca
 |   ||||||||||||||||||||| ||| |||||| |||| || |||          |  | || ||  | || ||      |||  | |||     |||  | |  ||   |  ||||    | | |    |||  |    |  |||   |  |  | |   |                                  
AAGTGTTGATGGTGATAATTGGTGGCAAGGCCATGCAACTGCATTTCTTTGTGCTGCTCACCTCCCAGCCGAGGTGCTCTTGAAAGGAAGGATTCACCAGgtttgatgtttg--taccatcacaagcttc----ccacaagctgacttggtcactcactatttcag----------------------------------