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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaaatttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag

Basic information

species Arabidopsis thaliana
transcript AT1G05790.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G44440.1 (Glycine max), 5'ss of exon 9
CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaa----atttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag
|||  |  | | | |||||| ||  |||| ||  | ||||| || ||||||||| | ||||  | ||||||| | |||||||||||||||||||||||||||    | |  | |  |   ||||| || | | ||   ||  || ||   ||   |  |  |||| |   |||  |  |||
CTTTATAACCGCTACCCTAATCTTCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattgtagttgattctgtttggtaacattttccgtttctgcttgctttcattgatg-cag

upper sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G39210.1 (Glycine max), 5'ss of exon 10
CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaa----atttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag--
|||  |  | | | |||||| ||  |||| ||  | ||||| || ||||||||| | ||||  | ||||||| | |||||||||||||||||||||||||||    | |  | |  |   ||||| ||   | ||   ||  || ||  ||| || ||   ||   |||  |  || |     
CTTTATAACCGCTACCCTAATCTGCATGTTTACTCATATGGGCCACTCCCATGTCTGGATTTAGTTGTGGCAAATGCATGTTCAGAATTTGTTACAAGgtaattgtactagtaaaaagtttgattatagctgattctctttggtaac--att-ttcagtttctgcttgctttcattgatgcag

upper sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0124g00200.t01 (Vitis vinifera), 5'ss of exon 5
CTTCGTTGCAGATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGCAGAGGCATGTTCAGAATTTGTTACAAGgtaaatttttgatcatgctgattttaatggtttagattaagtcactaattgtttagccccttgatgcaattcttaacag------------------------------------------------------------------------------------------
 |   | || ||| ||| ||  || |||| ||| |||||||  | || |||||||| ||||| | ||| ||||| ||||||||||||||||| ||||||||| ||    || || |   ||          |  |||     ||  ||   |   |  || |||   ||| || ||                                                                                           
TTGTATGGCCGATACCCAAATTTACATGTCTATTCCTATGGGACCCTTCCATGTGTGGATTCAGTTGTAGCAGATGCATGTTCAGAATTTGTCACAAGgtaa-ttgcaaatgataccagttggtccaaggcaagttattgtcctcttttgctgttcttttcatgtg-ttcctaccaattcagtgaataacaattgtagcaaggatttgtatatagattttctattgcctgggacacctaataatggaggtgcttgaacttcatgcag