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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGATGGTGACCATGATTGTTTTATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATATTTTCACAGgttggttcccaaaattgttcctgcctagaccttcttaaaagctaagttatatagtatgatgtgatcctttttatttgatctccatgcgtcttgtggctatgtttctcttttag

Basic information

species Arabidopsis thaliana
transcript AT1G03960.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 8
ACTTGATGGTGACCATGATTGTTTTATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATATTTTCACAGgttggttcccaaaattgttcctgcctagaccttcttaaaagctaagttatatagtatgatgtgatcctttttatttgatctccatgcgtcttgtggctatgtttctcttttag
 || ||||  ||||| |||| ||| ||||||||||| ||||||||||||||||| ||  || |  | ||||| || || ||||||||||| ||  |||||||| ||   |  |||| ||     | | |||||         | |   | ||  | || | ||   | || |||| |  ||   | |  ||| | |                 
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAAAATCTCATCAAATATGGGAACCATTCGTTGACCTATAGAATAGTTGATAGAATTTTCGCACAGgttagtctactcaatt-ttagcatcaaaaccttagccctttattaccaaaatgttgtgctttgtgtccttatattggcccttt-tactgcttttag-----------------

upper sequence: AT1G03960.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 9
ACTTGATGGTGACCATGATTGTTTTATTGATAAGGACAATCTCATCAAATATGGTAATAATGCCCTTACCTACAGGATTGTTGATAGAATATTTTCACAGgttggttccca----aaattgttcctg-----cctagaccttcttaaaagctaagttata-------tagtatg--atgtgatcctttttatttgatctccatgcgtcttgtggctatgtttctcttttag
 || ||    || |||||||  || ||||| || || |||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||||| | |   |      | | || |          |||     |||| | ||   ||| |        |  |||  |||| |      || ||  | ||    |  | |||||  |   ||    | | ||
GCTGGACACAGATCATGATTTCTTGATTGACAAAGAGAATCTCATCAGATATGGTAATCATGCTCTTACCTACAGGATCGTTGATAGAATATTTTCACAGgtttgcttttatcttggaatatttccaaaagattcagattaaattaataactgctttaaagtagaagcaacatgctatgtaaaatgactttttccaccttttggttttttgtgcttcaattatcttctcag