Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttactttacaaaccagaacatggttgtttgatttttccgagcttttttgttatttatcatttatttgactggaatcatctatatggtggatgtccttgcagAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAA

Basic information

species Arabidopsis thaliana
transcript AT1G03960.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03960.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 3'ss of exon 10
gttagttactttacaaaccagaacatggttgtttgatttttccgagcttttttgttatttatcatttatttgactggaatcatctatatggtggatgtccttgcagAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAA
                                 |   || ||  |  | ||   | |   |   ||||| ||   ||  | ||  ||||  |     |   | ||||| |||| || | | || || | |||  | ||| | |  ||||| |||| |||| | |||||||| || ||||| || || |||||||||||||||||||
--------------------------------gtagattctcatacatattacataa---acgttttatctg---ggcttgataaatatttt---cctttctacagAATGAGAGCTATTTAACTCTACGGGACTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAA

upper sequence: AT1G03960.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv07s0005g03730.t01 (Vitis vinifera), 3'ss of exon 11
gttagttactttacaaaccagaacatggttgtttgatttttccgagcttttttgttatttatcatttatttgactggaatcatctatatggtg-gatgtc--cttgcagAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAA
                       || || | |||  |  | || || |  | |    | |   | |  || |     | |||| |  | ||   ||| |   |||||||| |||  | | ||||||||| |  ||  |||| ||||  |||||||| | ||| ||||||||||| || ||||| ||||||||||||||||| |||||||
---------------------gtcacggcttttt--tcgtacccagatcatctcccgtgttctagtagttagcaataactcattttcagggcatgatttttgcttgcagAGGGAAGAATATATCACCCTACGTGACTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085050|gb|DR380809.1|DR380809
EST:     CTATGTCAAATAATTGACATGATTGGACCCGAG                         AAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCA
genomic: CTATGTCAAATAATTGACATGATTGGACCCGAGgttagttact ... gtccttgcagAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttatttatcatttatttgactggaatcatctatatggtggatgtccttgcagAAGGAGAACTGTATCACCCTCCAGGATCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAA
                atttgac  putative branch site (score: 4)
                                            tgtcctt  putative PPT
     atttatcatttatttg  TA-rich tract