1 5' 3' | 2 5' 3' | 3 5' 3' |
ATATGTCCTGTATGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatccttttttgtttcttttcaaaacctttcaagtcaaatttccgtcgctataatgaatgtgatttatttgaaattccttgaccgataattttac
species | Arabidopsis thaliana |
transcript | AT1G02750.1 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAAEST: gi|86088347|gb|DR384106.1|DR384106
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAAEST: gi|86069469|gb|DR365226.1|DR365226
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAAEST: gi|19878833|gb|AU239664.1|AU239664
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTCCTGTATGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatccttttttgtttcttttcaaaacctttcaagtcaaatttccgtcgctataatgaatgtgatttatttgaaattccttgaccgataattttac
- - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG