Sequence
atgc intronic sequence ATGC exonic sequencegtccgtgtcctccttgtatttgccctcgctttattttgtatctttaacactacttacttgatcgcgtatcgttttcatagGTGTACGACTGGATGAACAACAGAGGCGAAAGGTTTCGGTTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCATTCCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G02150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124716690|gb|EH808092.1|EH808092EST: GGGTCGTCAAGGAGCTTCGCAAGTACAAGCGTGCCAACCAAGCTCTCGAG GTGTACGACTGGATGAACAACAGAGGCGAAAGGTTTCGGTTGT
genomic: GGGTCGTCAAGGAGCTTCGCAAGTACAAGCGTGCCAACCAAGCTCTCGAGgtccgtgtcc ... gttttcatagGTGTACGACTGGATGAACAACAGAGGCGAAAGGTTTCGGTTGT
EST:
gi|124964641|gb|EL038889.1|EL038889EST: GGGTCGTCAAGGAGCTTCGCAAGTACAAGCGTGCCAACCAAGCTCTCGAG GTGTACGACTGGATGAACAACAG
genomic: GGGTCGTCAAGGAGCTTCGCAAGTACAAGCGTGCCAACCAAGCTCTCGAGgtccgtgtcc ... gttttcatagGTGTACGACTGGATGAACAACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgctttattttgtatctttaacactacttacttgatcgcgtatcgttttcatagGTGTACGACTGGATGAACAACAGAGGCGAAAGGTTTCGGTTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCATTCCAG
tcgttttc CT-rich tract
ttattttgtatcttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccgtgtcctccttgtatttgccctcgctttattttgtatctttaacactacttacttgatcgcgtatcgttttcatagGTGTACGACTGGATGAACAACAGAGGCGAAAGGTTTCGGTTGTCTGCAAGTGATGCTGCAATCCAGCTCGACTTAATCGGCAAAGTGCGTGGCATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG