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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcagtctctttatatttttttcagacagctatgctctcttgtgaaatgctgaaagctttctaatgttttgtgctgttgtttagGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATACTGGCTAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCA

Basic information

species Arabidopsis thaliana
transcript AT1G02050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068216|gb|DR363973.1|DR363973
EST:     AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGT                         GCAAAACGACAACCGTGAAGACCCGATACACTGTGTTGACGCGAGAGATAC
genomic: AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTgtaagcctca ... tgttgtttagGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATAC
EST: gi|86068214|gb|DR363971.1|DR363971
EST:     AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGT                         GCAAAACGACAACCGTGAANACCCGATACACTGTGTTGACGCGAGAGATAC
genomic: AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTgtaagcctca ... tgttgtttagGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATAC
EST: gi|86068215|gb|DR363972.1|DR363972
EST:     AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGT                         GCAAAACGACAACCGTGAAGACCCGATACACTGTGTTGACGCGAGAGATAC
genomic: AGACACCAAATGTGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTgtaagcctca ... tgttgtttagGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgctctcttgtgaaatgctgaaagctttctaatgttttgtgctgttgtttagGCAAAACGACAACCGTGAAGACGCGATACACTGTGTTGACGCGAGAGATACTGGCTAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCA
                             ttctaat  putative branch site (score: 2)
                                taatgtttt  TA-rich tract