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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGTCTTCATTTGCGCCAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgcttgactggtttatattgacatacccagcaaatcacaagacctgagattggtacccagtggatacctagttaaaagatgggaaactaattga...

Basic information

species Zea mays
transcript GRMZM2G363460_T03
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355282|gb|CD439639.1|CD439639
EST:     CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAG                         C--C-GATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... gtgcttttagCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|31354170|gb|CD438527.1|CD438527
EST:     CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAG                         CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: CAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... gtgcttttagCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|76281031|gb|DV020599.1|DV020599
EST:     ATCATTTTCAAGATCCTATGGC--G                         -AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: ATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... gtgcttttagCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|78109255|gb|DV527671.1|DV527671
EST:     GATCATTTTCAAGATCCTATGGCGAG                         CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: GATCATTTTCAAGATCCTATGGCGAGgtaagctgct ... gtgcttttagCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
EST: gi|110517843|gb|EE022430.1|EE022430
EST:     TCATTTTCAAGATCCTATGGC--G                         -AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG
genomic: TCATTTTCAAGATCCTATGGCGAGgtaagctgct ... gtgcttttagCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGTCTTCATTTGCGCCAGCACCTGCTGAACCTACAGCTGGATCATTTTCAAGATCCTATGGCGAGgtaagctgcttgactggtttatattgacatacccagcaaatcacaagacctgagattggtacccagtggatacctagttaaaagatgggaaactaattga

- - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagatg