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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggaggcccttgtctgttgcatttctgatacaatgatgtctttgagttgaacgggttttcatgtgtttgtgttttccccccttaaaaaaattgcag

Basic information

species Zea mays
transcript GRMZM2G363460_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71312716|gb|DR792886.1|DR792886
EST:     ACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: ACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|78075299|gb|DV503733.1|DV503733
EST:     ATAGGTCTTTTGGCAGTAAG                         CCATGGGAGATGCATTTGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: ATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|76912797|gb|DV164885.1|DV164885
EST:     CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|31355282|gb|CD439639.1|CD439639
EST:     C--C-GATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|31354170|gb|CD438527.1|CD438527
EST:     CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|60344992|gb|DN211965.1|DN211965
EST:     AGCAGCCGATGTCCCCTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: AGCAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|76281031|gb|DV020599.1|DV020599
EST:     -AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|78109255|gb|DV527671.1|DV527671
EST:     CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
EST: gi|110517843|gb|EE022430.1|EE022430
EST:     -AGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAG                         CCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC
genomic: CAGCCGATGTCCACTGCACAACGAAGCGATAGGTCTTCTGGCAGTAAGgtgagaggag ... aaaattgcagCCATGGGAGATGCATTCGTATTCACAACAGAGGCCTGGTTATGGATCCAAC