1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATTCGAGGGTTATGTTGGGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagactttagctgtcaatgaacaaggattccattgcattttgtagttgtcaatacaaccaggattccgcagtgttttgtccgtgtcataagctttgtgctttgtcacag
species | Zea mays |
transcript | GRMZM2G154328_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCAEST: gi|6827147|gb|AW330790.1|AW330790
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
EST: GGTTTTTACTT-TGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCAEST: gi|211458057|gb|FL124703.1|FL124703
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
EST: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTCGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCAEST: gi|60349253|gb|DN216226.1|DN216226
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
EST: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCAEST: gi|211458060|gb|FL124706.1|FL124706
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
EST: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCAEST: gi|91050504|gb|EB160922.1|EB160922
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
EST: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAG GTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
genomic: GGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagact ... tttgtcacagGTTGTGGTATGCGGGATCCTGCTGATCGCGATGGCAATCGGTAACTTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTCGAGGGTTATGTTGGGTTTTTACTTCTGCGCACAGCTCATACTGGCGTTGTCCCTGAGTGGCAGgtcagagactttagctgtcaatgaacaaggattccattgcattttgtagttgtcaatacaaccaggattccgcagtgttttgtccgtgtcataagctttgtgctttgtcacag
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - AGCTCA